Publications



2017

  • UNVER T, WU Z, STERCK L, TURKTAS M, LOHAUS R, LI Z, YANG M, HE L, DENG T, ESCALANTE FJ, LLORENS C, ROIG FJ, PARMAKSIZ I, DUNDAR E, XIE F, ZHANG B, IPEK A, URANBEY S, ERAYMAN M, ILHAN E, BADAD O, GHAZAL H, LIGHTFOOT DA, KASARLA P, COLANTONIO V, TOMBULOGLU H, HERNANDEZ P, METE N, CETIN O, VAN MONTAGU M, YANG H, GAO Q, DORADO G, and VAN DE PEER Y. 2017. Genome of wild olive and the evolution of oil biosynthesis Proc. Natl. Acad. Sci. USA published ahead of print October 9, 2017, doi:10.1073/pnas.1708621114.
  • RAMIREZ M, VELÁZQUEZ R, LÓPEZ-PIÑEIRO A, NARANJO B, ROIG F and LLORENS C. 2017. New Insights into the Genome Organization of Yeast Killer Viruses Based on “Atypical” Killer Strains Characterized by High-Throughput Sequencing. Toxins 9(9), 292; doi:10.3390/toxins9090292
  • CORTÉS-ACHA B, FIGUEIREDO R, SEMINAGO R, ROIG FJ, LLORENS C, VALMASEDA-CASTELLÓN E. 2017. Microbiota Analysis of Biofilms on Experimental Abutments Mimicking Dental Implants: An in Vivo Model. Journual of Periodontology 01-20 : doi:10.1902/jop.2017.170051
  • 2016

  • BERLANGA M, LLORENS C, COMAS J, GUERRERO R. 2016. Gut Bacterial Community of the Xylophagous Cockroaches Cryptocercus punctulatus and Parasphaeria boleiriana. PLoS ONE 11(4): e0152400. doi:10.1371/journal.pone.0152400
  • 2015

  • CAMPOS M, LLORENS C, SEMPERE JM, FUTAMI R, RODRIGUEZ I, CARRASCO P, CAPILLA R, LATORRE A, COQUE TM, MOYA A AND BAQUERO F. 2015. A membrane computing simulator of trans-hierarchical antibiotic resistance evolution dynamics in nested ecological compartments (ARES). Biology Direct 2015, 10:41.
  • 2014

  • LYSØE E, HARRIS LJ, WALKOWIAK S, SUBRAMANIAM R, DIVON HH, RIISER ES, LLORENS C, GABALDÓN T, KISTLER HH, JONKERS W, KOLSETH AK, NIELSEN KF, THRANE U, and FRANDSEN RJN. 2014. The Genome of the Generalist Plant Pathogen Fusarium avenaceum Is Enriched with Genes Involved in Redox, Signaling and Secondary Metabolism. PLoS ONE 9(11): e112703. doi:10.1371/journal.pone.0112703
  • 2013

  • CARMONA BAYONAS A, LUENGO GIL G, FONT PUIG CA, LLORENS C. 2013. Los elementos geneticos moviles en la celula tumoral: El despertar de un gigante. REVISTA EUBACTERIA (NOVIEMBRE 2013) Nº32 / ISSN-1697-0071
  • 2012

  • LLORENS C, BERNET GP, RAMASAMY S, FESCHOTTE C, MOYA A 2012. On the transposon origins of mammalian SCAND3 and KRBA2, two zinc-finger genes carrying an integrase/transposase domain. Mobile Genetic Elements 2(5), September-October-2012.
  • 2011

  • BERNET GP, MUÑOZ-POMER A, DOMINGUEZ-ESCRIBA L, COVELLI L, BERNAD L, RAMASAMY S, FUTAMI R, SEMPERE JM, MOYA A AND LLORENS C. 2011. GyDB Mobilomics: LTR retroelements and integrase-related transposons of the Pea aphid Acyrthosiphon pisum genome. Mobile Genetic Elements 1(2), 0-1. 1-7-2011. Landes Bioscience.
  • COVELLI L, MUÑOZ-POMER A, DOMINGUEZ-ESCRIBA L, FUTAMI R, BERNET GP, MOYA A and LLORENS C. 2011. The GyDB collection is now publicly available within the Gypsy Database of Mobile Genetic Elements. Biotechvana bioinformatics:2011-CR1
  • MUÑOZ-POMER A, FUTAMI R, SEMPERE JM, MOYA A, and LLORENS C. 2011. CheckAlign 2.0. Biotechvana Bioinformatics: 2011-SOFT1.
  • MUÑOZ-POMER A, FUTAMI R, COVELLI L, DOMÍNGUEZ-ESCRIBÀ L, BERNET GP, SEMPERE JM, MOYA A, and LLORENS C. 2011. TIME: a sequence editor for the molecular analysis of large DNA and protein sequence samples. Biotechvana Bioinformatics: 2011-SOFT2.
  • Futami R, Muñoz-Pomer A, Viu JM, Dominguez-Escribá L, Covelli L, Bernet GP, Sempere JM, Moya A, Llorens C. GPRO: the professional tool for management, functional analysis and annotation of omic sequences and databases (2011) Biotechvana Bioinformatics: 2011-SOFT3
  • LLORENS C, FUTAMI R, COVELLI L, DOMINGUEZ-ESCRIBA L, VIU JM, TAMARIT D, AGUILAR-RODRIGUEZ J, VICENTE-RIPOLLES M, FUSTER G, BERNET GP, MAUMUS F, MUNOZ-POMER A, SEMPERE JM, LATORRE A, and MOYA A. 2011. The Gypsy Database (GyDB) of mobile genetic elements: release 2.0 Nucleic Acids Research (NARESE) 39 (suppl 1): D70-D74 doi: 10.1093/nar/gkq1061
  • 2010

  • THE INTERNATIONAL APHID GENOMICS CONSORTIUM (including LLORENS C, FUTAMI R AND MOYA A). 2010 . Genome Sequence of the Pea Aphid Acyrthosiphon pisum. PLoS Biol, 8(2):e1000313 DOI / ISBN:10.1371/journal.pbio.1000313
  • 2009

  • LLORENS C, MUÑOZ-POMER A, BERNAD L, BOTELLA H, and MOYA A. 2009. Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees. Biology Direct, 4:41
  • LLORENS C, FUTAMI R, RENAUD G, and MOYA A. 2009. Bioinformatic Flowchart and Database to Investigate the Origins and Diversity of Clan AA Peptidases. Biology Direct, 4:3
  • LLORENS C, MUÑOZ-POMER A, FUTAMI R, and MOYA A. 2009. The GyDB Collection of Viral and Mobile Genetic Element Models. In Biotechvana Bioinformatics, CR: GyDB collection V2
  • 2008

  • LLORENS C, FUTAMI R, BEZEMER D and MOYA A. 2008. The Gypsy Database (GyDB) of mobile genetic elements. Nucleic Acids Research (NAR) 36 (Database Issue):38-46
  • LLORENS C, FARES MA, and MOYA A. 2008. Relationships of gag-pol diversity between Ty3/Gypsy and Retroviridae LTR retroelements and the three kings hypothesis. BMC Evolutionary Biology, 8:276
  • LLORENS C, FUTAMI R, MUÑOZ-POMER A, VICENTE-RIPOLLES M, and MOYA A. 2008. Introducing Biotechvana Bioinformatics. In Biotechvana Bioinformatics, Intro
  • LLORENS C, FUTAMI R, VICENTE-RIPOLLÉS M, and MOYA A. 2008. The CheckAlign logo-maker application in analyses of both gapped and ungapped DNA and protein alignments. In Biotechvana Bioinformatics, SOFT:CheckAlign
  • LLORENS C, FUTAMI R, VICENTE-RIPOLLÉS M, and MOYA A. 2008. Phylograph: A multifunction java editor for handling phylogenetic trees. In Biotechvana Bioinformatics, SOFT: Phylograph
  • LLORENS C, FUTAMI R, and MOYA A. 2008. The GyDB collection: Ty3/Gypsy and Retroviridae LTR retroelements and related nonviral proteins. In Biotechvana Bioinformatics, CR:GyDB collection
  • FUTAMI R, LLORENS C, VICENTE-RIPOLLÉS M, and MOYA A. 2008. The GyDB Package 1.0. In Biotechvana Bioinformatics, DU: GyDB Package
  • LLORENS C, VICENTE-RIPOLLÉS M, and MOYA A. 2008. The Join Alignments Server version 1.0. In Biotechvana Bioinformatics, SCR:JAS
  • LLORENS C, VICENTE-RIPOLLÉS M, and MOYA A. 2008. The Alignment Format Converter Server 1.0 In Biotechvana Bioinformatics SCR: AFC
  • LLORENS C, FUTAMI R, VICENTE-RIPOLLES M, and MOYA A. 2008. Biotechvana Search Engine 1.0. In Biotechvana Bioinformatics DU:BSE
  • FUTAMI R, LLORENS C, and MOYA A. 2008. Biotechvana Queue Manager 1.0. In Biotechvana Bioinformatics, DU:BQM
  • LLORENS C, VICENTE-RIPOLLÉS M, and MOYA A. 2008. RMXSC server 1.0. In Biotechvana Bioinformatics, SCR: RMXSC
  • 2001

  • LLORENS C and MARIN I. 2001. A mammalian gene evolved from the Integrase domain of an LTR-retrotransposon. Molecular Biology and Evolution. 18 (8): 1597-1600
  • 2000

  • MARIN I and LLORENS C. 2000. "Ty3/Gypsy Retrotransposons: Description of new Arabidopsis thaliana elements and evolutionary perspectives derived from comparative genomic data". Molecular Biology and Evolution. 17(7): 1040-1049






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